3 edition of **Biological sequence analysis using the SeqAn C++ library** found in the catalog.

- 254 Want to read
- 34 Currently reading

Published
**2009** by Chapman & Hall/CRC Taylor & Francis in Boca Raton .

Written in English

- Information storage and retrieval systems -- Nucleotide sequence,
- Nucleotide sequence -- Data processing

**Edition Notes**

Includes bibliographical references and index.

Statement | Andreas Gogol-Döring, Knut Reinert. |

Series | Mathematical and computational biology |

Contributions | Reinert, Knut. |

Classifications | |
---|---|

LC Classifications | QP625.N89 G64 2009 |

The Physical Object | |

Pagination | p. cm. |

ID Numbers | |

Open Library | OL24117021M |

ISBN 10 | 9781420076233 |

LC Control Number | 2009036644 |

Handapparat_AG-ABI, Sonderstandort Takustr. 9, Informatik (Präsenzbestand) Page 1 of 5 Autor (Name, Vorname) Titel Verlag: Ort, Jahr (Ausgabe/Auflage) Signatur. In conclusion, the KNIME Image Processing extensions not only enable scientists to easily mix-and-match image processing algorithms with tools from other domains (e.g. machine-learning), scripting languages (e.g. R or Python) or perform a cross-domain analysis using heterogenous data-types (e.g. molecules or sequences), they also open the doors Cited by:

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Written by the founders of this project, Biological Sequence Analysis Using the SeqAn C++ Library covers the SeqAn library, its documentation, and the supporting infrastructure.

The first part of the book describes the general library design. The first part of the book describes the general library design.

It introduces biological sequence analysis problems, discusses the benefit of using software libraries, summarizes the design principles and goals of SeqAn, details the main programming techniques used in SeqAn, and demonstrates the application of these techniques in various examples. The first part of the book describes the general library design.

It introduces biological sequence analysis problems, discusses the benefit of using software libraries, summarizes the design principles and goals of SeqAn, details the main programming techniques used in SeqAn, and demonstrates the application of these techniques in various : Hardcover.

Addressing these concerns, the developers of SeqAn created a comprehensive, easy-to-use, open source C++ library of efficient algorithms and data structures for the analysis of biological sequences. Written by the founders of this project, Biological Sequence Analysis Using the SeqAn C++ Library covers the SeqAn library, its documentation, and.

Get this from a library. Biological sequence analysis using the SeqAn C++ library. [Andreas Gogol-Döring; Knut Reinert]. Note: If you're looking for a free download links of Biological Sequence Analysis Using the SeqAn C++ Library (Chapman & Hall/CRC Mathematical and Computational Biology) Pdf, epub, docx and torrent then this site is not for you.

only do ebook promotions online and we does not distribute any free download of ebook on this site. Biological Sequence Analysis Using the SeqAn C++ Library by Knut Reinert,available at Book Depository with free delivery worldwide.5/5(1).

Biological sequence analysis using the SeqAn C++ library. Boca Raton: CRC Press, © (DLC) (OCoLC) Material Type: Document, Internet resource: Document Type: Internet Resource, Computer File: All Authors. An Easy-to-Use Research Tool for Algorithm Testing and DevelopmentBefore the SeqAn project, there was clearly a lack of available implementations in sequence analysis, even for standard tasks.

Implementations of needed algorithmic components were either unavailable or hard to access in third-party monolithic software products.

Addressing these concCited by: 6. Before the SeqAn project, there was clearly a lack of available implementations in sequence analysis, even for standard tasks.

Implementations of needed algorithmic components were either unavailable or hard to access in third-party monolithic software products. Addressing these concerns, the developers of SeqAn created a comprehensive, easy-to-use, open source C++ Cited by: 6.

Emde, M. Grunert, D. Weese, K. Reinert, and S. Sperling, “MicroRazerS: rapid alignment of small RNA reads.,” Bioinformatics (oxford, england), vol. 26, iss. Biological Sequence Analysis Using the SeqAn C++ Library Andreas Gogol-Döring An Easy-to-Use Research Tool for Algorithm Testing and DevelopmentBefore the SeqAn project, there was clearly a lack of available implementations in sequence analysis, even for standard tasks.5/5(1).

Buy Biological Sequence Analysis Using the SeqAn C++ Library (Chapman & Hall/CRC Mathematical & Computational Biology) (Chapman & Hall/CRC Mathematical and Computational Biology) 1 by Andreas Gogol-Döring, Knut Reinert (ISBN: ) from Amazon's Book Store.

Everyday low prices and free delivery on eligible orders. [] Includes bibliographical references and index. Biological Sequence Analysis Using the SeqAn C++ Library by Andreas Gogol-Döring; Knut Reinert ISBN ISBN X.

Biological Sequence Analysis Using the SeqAn C++ Library Andreas Gogol-Döring An Easy-to-Use Research Tool for Algorithm Testing and DevelopmentBefore the SeqAn project, there was clearly a lack of available implementations in Author: Michael Agostino.

Introduction. The analysis of biological sequences is at the core of computational biology. Advances in biotechnology have driven the development. of many successful algorithms (e.g., Myers’ bit-vector search algorithm Myers,BLAST Altschul et al., ) and data structures (e.g., suffix arrays Abouelhoda et al.,q-gram based string indices, FM-indices Ferragina Cited by: This section provides an overview of the X-drop implementation proposed by Zhang et al.

[3] and implemented in the SeqAn library [21], a C++ library for sequence analysis. First, we review the. Can anybody suggest a C++ book that describes the applications of the C++ programme in bioinformatics/ computational biology tools like sequence alignment etc. Thank you. @article{fu_mi_publications, year = {}, title = {The SeqAn C++ template library for efficient sequence analysis: A resource for programmers}, volume = {}, month = {November}, publisher = {ELSEVIER}, journal = {Journal of Biotechnology}, pages = {}, author = {Knut Reinert and Temesgen Hailemariam Dadi and Marcel Ehrhardt and.

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A C++ library for biological sequence analysis. SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. Biological Sequence Analysis Using the SeqAn C++ Library. Gogol-Döring, Andreas; Reinert, Knut efficient algorithms and data structures for the analysis of biological sequences.

Written by the founders of this project, Biological Sequence Analysis. SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. SeqAn is free software available under the three clause BSD license and runs under Windows, Mac OS X and Linux.

The library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with. The State of the Art in Transcriptome Analysis RNA sequencing (RNA-seq) data offers unprecedented information about the transcriptome, but harnessing this information with bioinformatics tools is typically a bottleneck.

RNA-seq Data Analysis: A Practical Approach enables researchers to examine differential expression at gene, exon, and transcript levels. Biomedical Science and Engineering: CRC Press Catalog.

About for Book Survival Analysis Using S: Analysis of Time-to-Event Data (Chapman Hall/CRC Texts. Biological Sequence Analysis Using the SeqAn C++ Library. Knut Reinert. 13 Nov Introduction to Proteins would provide an excellent basis for an upper level or graduate course on protein structure, and a valuable addition to the libraries of professionals interested in this centrally important field.

The book also covers structural 3/5(2). Computational Exome and Genome Analysis Jäger, Marten, Piro, Rosario M., Robinson, Peter Nicholas Exome and genome sequencing are revolutionizing medical research and diagnostics, but the computational analysis of the data has become an extremely heterogeneous and often challenging area of bioinformatics.

The bioinformatics library libcov is a collection of C++ classes that provides a high and low-level interface to maximum likelihood phylogenetics, sequence analysis and a data structure for.

Biological Sequence Analysis Using the SeqAn C++ Library 1st Edition. Andreas Gogol-Döring, Knut Reinert J An Easy-to-Use Research Tool for Algorithm Testing and Development Before the SeqAn project, there was clearly a lack of available implementations in sequence analysis, even for standard tasks.

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Chapman & Hall/CRC Mathematical & Computational Biology (共14册), 这套丛书还有 《Cellular Potts Models》,《Biological Sequence Analysis Using the SeqAn C++ Library (Chapman & Hall/CRC Mathematical & Computational Biology)》,《Computational Systems Biology of Cancer》,《Python for Bioinformatics (Chapman & Hall/Crc Mathematical.

The book is devoted to teaching the statistical and computational techniques molecular biologists need to analyze their data. It explains the big-picture concepts in data analysis using a wide variety of real-world molecular biological examples such as eQTLs, ortholog identification, motif finding, inference of population structure, protein.

a C++ library designed to aid writing applications for genomics and evolutionary genetics. A large amount of the library is dedicated to the analysis of "single nucleotide polymorphism", or SNP data.

The library is intended to be viewed as a "BioC++" akin to the bioperl project, although libsequence tries not to re-invent the wheel. Biological Sequence Analysis Using the SeqAn C++ Library Andreas Gogol-Döring Institut fur Informatik, Berlin, Germany Knut Reinert Freie Universität Berlin, Germany.

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